../../tmp/servers/virsirnadb/2021333161
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1278 | 2 | tacaggtaagatgctcat | 19 | |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 2095 | .................. | 2112 | 94 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 2095 | .................. | 2112 | 94 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 2095 | .................. | 2112 | 94 |
| AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 2098 | _................. | 2114 | 89 |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 2095 | ......c........... | 2112 | 89 |
| AY465356.1 | Human enterovirus 71 strain SHZH03, complete genome | 2092 | ...c.............. | 2109 | 89 |
| FJ606447.1 | Human enterovirus 71 strain BJ08-Z004-3, complete genome | 2092 | ...c.............. | 2109 | 89 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 2092 | ...c.............. | 2109 | 89 |
| FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 2091 | ...c.............. | 2108 | 89 |
| FJ607338.1 | Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c | 2091 | ...c.............. | 2108 | 89 |
| GQ892830.1 | Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome | 2092 | ...c.............. | 2109 | 89 |
| GU459070.1 | Human enterovirus 71 isolate FY23-K12, complete genome | 2095 | ...c.............. | 2112 | 89 |
| GU459071.1 | Human enterovirus 71 isolate FY23-K14, complete genome | 2092 | ...c.............. | 2109 | 89 |
| HM002486.1 | Human enterovirus 71 strain BJ110, complete genome | 2093 | ...c.............. | 2110 | 89 |
| HM002487.1 | Human enterovirus 71 strain BJ303, complete genome | 2093 | ...c.............. | 2110 | 89 |
| HM002488.1 | Human enterovirus 71 strain BJ366, complete genome | 2092 | ...c.............. | 2109 | 89 |
| AB575912.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108 | 2045 | ...............t.. | 2062 | 89 |
| HQ423143.1 | Human enterovirus 71 strain KM186/09, complete genome | 2092 | ...c.............. | 2109 | 89 |
| HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 2092 | ...c.............. | 2109 | 89 |
| AY421767.1 | Human coxsackievirus A10 strain Kowalik, complete genome | 2092 | _..............g.. | 2108 | 84 |
| DQ341362.1 | Human enterovirus 71 isolate SB12736-SAR-03, complete genome | 2098 | _..g.............. | 2114 | 84 |
| DQ341363.1 | Human enterovirus 71 isolate S19841-SAR-03, complete genome | 2098 | _..g.............. | 2114 | 84 |
| DQ341364.1 | Human enterovirus 71 isolate 5511-SIN-00, complete genome | 2098 | _..g.............. | 2114 | 84 |
| FJ461781.1 | Human enterovirus 71 isolate NUH0083/SIN/08, complete genome | 2062 | _..g.............. | 2078 | 84 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 2096 | _.....c........... | 2112 | 84 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 2096 | _.....c........... | 2112 | 84 |
| AF119795.2 | Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds | 2093 | ...c..c........... | 2110 | 84 |
| AF136379.1 | Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds | 2095 | ...c..c........... | 2112 | 84 |
| AF119796.3 | Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds | 2093 | ...c..c........... | 2110 | 84 |
| AF176044.1 | Enterovirus 71 polyprotein gene, complete cds | 2096 | ...c..c........... | 2113 | 84 |
| AF304457.1 | Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds | 2095 | ...c..c........... | 2112 | 84 |
| AF304458.1 | Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds | 2095 | ...c..c........... | 2112 | 84 |
| AF304459.1 | Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds | 2095 | ...c..c........... | 2112 | 84 |
| AB192877.1 | Human enterovirus 90 genomic RNA, complete genome | 2108 | ...t..a........... | 2125 | 84 |
| DQ060149.1 | Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome | 2095 | ...c..c........... | 2112 | 84 |
| DQ133458.1 | Human enterovirus 71 strain 984 polyprotein gene, complete cds | 2092 | ...c..c........... | 2109 | 84 |
| DQ133459.1 | Human enterovirus 71 strain 1235 polyprotein gene, complete cds | 2092 | ...c..c........... | 2109 | 84 |
| DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 2094 | ...c..c........... | 2111 | 84 |
| DQ341358.1 | Human enterovirus 71 isolate S40221-SAR-00, complete genome | 2094 | ...t...........t.. | 2111 | 84 |
| DQ341361.1 | Human enterovirus 71 isolate 1M-AUS-12-00, complete genome | 2094 | ...t...........t.. | 2111 | 84 |
| DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 2094 | ...c..c........... | 2111 | 84 |
| DQ452074.1 | Human enterovirus 71 strain 804/NO/03, complete genome | 2095 | ...t...........t.. | 2112 | 84 |
| AM396584.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 2093 | ...t..c........... | 2110 | 84 |
| AM396585.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 2093 | ...t..c........... | 2110 | 84 |
| EF373576.1 | Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet | 2092 | ...c..c........... | 2109 | 84 |
| EU131776.1 | Human enterovirus 71 strain N3340-TW-02, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| EU703812.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete | 2092 | ...c..c........... | 2109 | 84 |
| EU703813.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete | 2092 | ...c..c........... | 2109 | 84 |
| EU703814.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete | 2092 | ...c..c........... | 2109 | 84 |
| EU812515.1 | Human enterovirus 71 strain FY23 from China, complete genome | 2095 | ...c..g........... | 2112 | 84 |
| EU864507.1 | Human enterovirus 71 isolate EV71/Zhejiang08, complete genome | 2093 | ...c..c........... | 2110 | 84 |
| FJ172159.1 | Human enterovirus 71 isolate NUH0075/SIN/08, complete genome | 2055 | ...t..c........... | 2072 | 84 |
| FJ158600.1 | Human enterovirus 71 isolate DTID/ZJU-62, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| FJ158601.1 | Human enterovirus 71 isolate DTID/ZJU-74, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| FJ194964.1 | Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| FJ360544.1 | Human enterovirus 71 isolate GZ-08-01, complete genome | 2091 | ...c..c........... | 2108 | 84 |
| FJ360545.1 | Human enterovirus 71 isolate GZ-08-02, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| FJ360546.1 | Human enterovirus 71 isolate GZ-08-03, complete genome | 2091 | ...c..c........... | 2108 | 84 |
| FJ439769.1 | Human enterovirus 71 strain Fuyang-0805, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| FJ606448.1 | Human enterovirus 71 strain BJ08-Z011-4, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| FJ606449.1 | Human enterovirus 71 strain BJ08-Z020-1, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| FJ713137.1 | Human enterovirus 71 strain Shanghai 036-2009, complete genome | 2094 | ..tc.............. | 2111 | 84 |
| FJ828519.1 | Human enterovirus 71 isolate BJ08, complete genome | 2071 | ...c..c........... | 2088 | 84 |
| FJ607334.1 | Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g | 2091 | ...c..c........... | 2108 | 84 |
| FJ607335.1 | Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g | 2091 | ...c..c........... | 2108 | 84 |
| FJ607336.1 | Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete | 2090 | ...c..c........... | 2107 | 84 |
| GQ994988.1 | Human enterovirus 71 strain Anhui1-09-China, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| GQ994991.1 | Human enterovirus 71 strain Chongqing3-09-China, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| GU196833.1 | Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet | 1904 | ...c..c........... | 1921 | 84 |
| GU366191.1 | Human enterovirus 71 strain Henan10-08-China, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| GU396280.1 | Human enterovirus 71 isolate EV71/Lanzhou01, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| GQ279369.1 | Human enterovirus 71 strain SZ/HK08-5, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| GQ279370.1 | Human enterovirus 71 strain SZ/HK08-6, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HM002484.1 | Human enterovirus 71 strain BJ67, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HM002485.1 | Human enterovirus 71 strain BJ97, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HM002489.1 | Human enterovirus 71 strain BJ398, complete genome | 2093 | ...c..c........... | 2110 | 84 |
| HM053669.1 | Human enterovirus 71 strain BJ293, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HM053670.1 | Human enterovirus 71 strain BJ393, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HM053671.1 | Human enterovirus 71 strain BJ462, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HQ407557.1 | Human enterovirus 71 strain LN009, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| AB550332.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org | 2094 | ...c..c........... | 2111 | 84 |
| AB550333.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 | 2094 | ...c..c........... | 2111 | 84 |
| AB550338.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 2091 | ...c..c........... | 2108 | 84 |
| AB550339.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 2091 | ...c..c........... | 2108 | 84 |
| AB550340.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org | 2094 | ...t...........t.. | 2111 | 84 |
| AB550341.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS | 2094 | ...t...........t.. | 2111 | 84 |
| HQ188292.1 | Human enterovirus 71 strain Fuyang-0805a, complete genome | 2095 | ...c..c........... | 2112 | 84 |
| HQ325852.1 | Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome | 2093 | ...c..c........... | 2110 | 84 |
| AB575911.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 2031 | ...g...........t.. | 2048 | 84 |
| AB575913.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 119 | 2022 | .........a.....t.. | 2039 | 84 |
| AB575937.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141 | 2006 | ...t...........t.. | 2023 | 84 |
| AB575939.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365 | 2025 | ...c..c........... | 2042 | 84 |
| AB575941.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248 | 2033 | ...t..c........... | 2050 | 84 |
| AB575942.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369 | 2028 | ...t..c........... | 2045 | 84 |
| AB575948.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101 | 2051 | ...t..c........... | 2068 | 84 |
| HQ891923.1 | Human enterovirus 71 strain Shanghai 27-2009, complete genome | 2093 | ...c..c........... | 2110 | 84 |
| HQ891924.1 | Human enterovirus 71 strain Shanghai 28-2009, complete genome | 2093 | ...c..c........... | 2110 | 84 |
| HQ891925.1 | Human enterovirus 71 strain Shanghai 36-2009, complete genome | 2094 | ...c..c........... | 2111 | 84 |
| HQ891927.1 | Human enterovirus 71 strain Shanghai 64-2009, complete genome | 2093 | ...c..c........... | 2110 | 84 |
| HQ891928.1 | Human enterovirus 71 strain Shanghai 117-2009, complete genome | 2093 | ...c..c........... | 2110 | 84 |
| HQ891929.1 | Human enterovirus 71 strain Shanghai 118-2009, complete genome | 2093 | ...c..c........... | 2110 | 84 |
| HQ400942.1 | Human enterovirus 71 HZ08/Hangzhou/2008, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HQ423142.1 | Human enterovirus 71 strain KMM/09, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HQ456305.1 | Human enterovirus A strain GZ2010-156, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HQ456307.1 | Human enterovirus A strain GZ2010-120, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HQ456309.1 | Human enterovirus A strain GZ08-831, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HQ456311.1 | Human enterovirus A strain GZ08-522, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HQ456312.1 | Human enterovirus A strain GZ08-520, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HQ456313.1 | Human enterovirus A strain GZ2010-95, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 2092 | ...c..c........... | 2109 | 84 |
| JN001860.1 | Human enterovirus 71 strain NB/2010/01, complete genome | 2093 | ...c..c........... | 2110 | 84 |
| AF162711.1 | Echovirus 30 strain Bastianni, complete genome | 4968 | _...........a...._ | 4983 | 78 |
| AF311938.1 | Human echovirus 30 strain Bastianni, complete genome | 4973 | _...........a...._ | 4988 | 78 |
| AF302996.1 | Enterovirus 71 strain SHZH98 polyprotein gene, complete cds | 2094 | _..c..c........... | 2110 | 78 |
| AY421761.1 | Human coxsackievirus A3 strain Olson, complete genome | 2090 | _..g..c........... | 2106 | 78 |
| DQ341355.1 | Human enterovirus 71 isolate 06-KOR-00, complete genome | 2095 | _..c..c........... | 2111 | 78 |
| DQ341356.1 | Human enterovirus 71 isolate 03-KOR-00, complete genome | 2095 | _..c..c........... | 2111 | 78 |
| DQ341360.1 | Human enterovirus 71 isolate J115-MAL-01, complete genome | 2094 | _..t...........t.. | 2110 | 78 |
| GQ994989.1 | Human enterovirus 71 strain Chongqing1-09-China, complete genome | 2094 | _..c..c........... | 2110 | 78 |
| HQ426649.1 | Human enterovirus 71 strain 2010FJLY008, complete genome | 2091 | _..c..c........... | 2107 | 78 |
| HQ456308.1 | Human enterovirus A strain GZ2010-118, complete genome | 2093 | _..c..c........... | 2109 | 78 |
| AY302552.1 | Human echovirus 29 strain JV-10 complete genome | 2110 | .........at.c..... | 2127 | 78 |
| AY697458.1 | Human enterovirus 76 polyprotein gene, complete cds | 2115 | ...t.........t.g.. | 2132 | 78 |
| AY556070.1 | Enterovirus 75 strain USA/OK85-10362, complete genome | 5851 | _.........g....___ | 5864 | 68 |
| AJ276224.1 | Human echovirus 11 genomic RNA for polyprotein | 5852 | _.........g.t...__ | 5866 | 68 |
| AY843306.1 | Human enterovirus 88 strain BAN01-10398, complete genome | 5854 | _.........g.c...__ | 5868 | 68 |
| EF026081.1 | Human coxsackievirus A24 strain Joseph, complete genome | 3284 | __..t..........___ | 3296 | 63 |
| AF114383.1 | Coxsackievirus B5 strain Faulkner, complete genome | 6920 | _..g..........____ | 6908 | 63 |
| DQ902712.1 | Human enterovirus 84 isolate CIV2003-10603, complete genome | 2035 | ____...g........._ | 2047 | 63 |
| AF524867.1 | Human echovirus 9 isolate DM, complete genome | 6971 | ____...........___ | 6961 | 57 |